This is amazing!
I have never used FusionMap, FusionFinder or ChimeraScan myself, so I don’t know if they belong into the class of fancy named methods with only marginal improvements that I have been known to rant about (on and on) – but kudos to Panagopoulos et al for showing the amazing power of grep:
The “Grep” Command But Not FusionMap, FusionFinder or ChimeraScan Captures the CIC-DUX4 Fusion Gene from Whole Transcriptome Sequencing Data on a Small Round Cell Tumor with t(4;19)(q35;q13).
Panagopoulos I, Gorunova L, Bjerkehagen B, Heim S.
PLoS One. 2014 Jun 20;9(6):e99439. doi: 10.1371/journal.pone.0099439. eCollection 2014.